Scaffold Ga0209500_10001434

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10001434
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17927
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F042293	Metagenome / Metatranscriptome	158	N
F058807	Metagenome	134	Y
F088893	Metagenome / Metatranscriptome	109	N
F099290	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000143410	F058807	AGGAGG	MNVNLIKEHEDGSASYQFDLTHDEAQSLISFGILETFKSMIREGERLTVEGDDIENLSNPGLSD
Ga0209500_1000143413	F042293	GAG	VNAITFEELKEALKRLDEVTLVELLGLQSDDLVERFDDVIEKKQEYLIKELD
Ga0209500_1000143415	F099290	GGA	MILDFEFKTGLVFGIEADELYIMDDENNMSEEANQVIYLHIGFITLAFILGQ
Ga0209500_100014344	F088893	GGAG	VSVLSSMNIDKNQILFSVEGKTFKIKIGEDLDLEEVYTVLLSALMHLEDLVLGNTAHPSSQELH
Ga0209500_100014345	F005320	AGGA	MSIDTLKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAMMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIITELKVYSPEGEEEQETADDIL