Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10001007 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10001007 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22197
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (13.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22197

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (13.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036694	Metagenome	169	N
F041193	Metagenome	160	N
F046372	Metagenome / Metatranscriptome	151	N
F048308	Metagenome	148	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000100715	F052587	N/A	MLDNIPDNFIMSNKSIILCLITLCVHLLILKFLYSPYNELGIIQNYRIEIDSLNKINDSLYSEIKYHNIEIEHYEQEISYLGHQKQTVIIKYKTKVNEIDSLNNNNLVAEFDSIFSKFNY
Ga0209500_1000100716	F041193	N/A	LTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAEAYYLSDSLCQQQVILKGNQVKLYKKNEDKLQSIIGNQVTIIKFKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFALV
Ga0209500_1000100719	F052596	N/A	MNYEKFKQIIDLQIAHNKRVDELYALKIDTIEFFNELGRANELIWTEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKDIKELYDYLIENKGFK
Ga0209500_100010072	F046372	N/A	MACVLTSGYTFLGCKGGAGGIKKVYLTEFENNSGTGYTFTATAGLVTAYTLATGKKYRVYSLDKEMSNMTSPGTYTPGSGTISYEPQIDFTIKKLTTAVIQEIHLVAQNVLTMMVEDINGDYWLFGKDQGMDLMTWSLESGTALTDFNGQKLSFKGKEIAPIYKVTSTLIANLIA
Ga0209500_1000100737	F048308	AGCAG	MPTNEPFISKSMMYIELDIDQLNRLQMFNDRLKSHIDDLPRNSTGKRSRYFEQVKVMELFIEQNLKKFI
Ga0209500_1000100743	F036694	N/A	MISCKIKLVILHLSIKSIIDKHFADNYTYYKSVCKRYYNGRYLAEDMLHELYIKLSNSNPDQIERYHKANKLNCLGLLIIKDLFRHRTQKLFHIDGNTSNLFEAANFEILDFKQVDEEYFQIDEILIDKIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKNQLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10001007

Overview

Ecosystem & Geography

Associated Families

Sequences