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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10000723 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27257 |
| Total Scaffold Genes | 89 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (64.04%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009332 | Metagenome / Metatranscriptome | 319 | Y |
| F019477 | Metagenome / Metatranscriptome | 229 | Y |
| F028512 | Metagenome / Metatranscriptome | 191 | Y |
| F052599 | Metagenome / Metatranscriptome | 142 | Y |
| F097339 | Metagenome | 104 | Y |
| F102701 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000072324 | F097339 | GGAG | MNVSKITAHNLELDRIQRTQLQDKREDDYHKLVERRNFDQIIAERVSRNVRLGLDKGRNIDIEC |
| Ga0209500_1000072327 | F028512 | GGA | MNEFLKEIAIKAGAPEEVINELWFNIFCQKFAHELLIILEEET |
| Ga0209500_1000072336 | F102701 | AGGA | MNDEKDYDVVLDTLSIKRAILWKMTQSNMNMDMMNIMDDIRLEQIGQLDKAIAMWIKRNDAI |
| Ga0209500_1000072343 | F052599 | N/A | MNYWTIAFPGEFGQHVQETWSEDQILSSYYKYWSIKMIEAGKGDDISREACIDDWVVVHWACKTTEFGDKNEV |
| Ga0209500_1000072346 | F019477 | AGGAG | MGREFSELRIGRMFHLNGCDYVKQSTRTARMLSNGRTFYIGKAEYIHPIAW |
| Ga0209500_100007235 | F009332 | AGAAG | MIKWIFFVVILTSSIFAHSVSLKKTVECVDAETLFQGLIGSDYKEKSIWMGIESGANLPKYSLFVNEQTKTWTLIQFDDKIACVLGTGEGSTQIFYGPKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |