Scaffold Ga0209500_10000721

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000721
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27300
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F010521	Metagenome	302	Y
F014955	Metagenome	258	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000072114	F010521	N/A	MKLSPAIIRNLYSAIYCMKPFCSYKNMPLPEEIEFIVDKGEDMGTYLYDPGSDDYEHTITISEVRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRKRAHRIWSEIGFVDPLEL
Ga0209500_1000072120	F014955	GGAG	MDIEKYIVAATGLGYLVVGLAQYAKGSPSNAFIWLGYAAAQIGLWMNLK
Ga0209500_1000072124	F007166	N/A	MAFINKGNDMDEMHEVMNEMEERLEIALNNMEYGTDISADDIDVIRAACGKPNNKRNVLLQTVFNDFGNVFGGSK
Ga0209500_1000072127	F029048	AGGAG	MLSHIKDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLRDVIQVCADCCVNTTDREAILELLN