Scaffold Ga0209500_10000677

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000677
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28275
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (42.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F019637	Metagenome / Metatranscriptome	228	Y
F032255	Metagenome / Metatranscriptome	180	N
F044973	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000067717	F001259	AGGAGG	MRDCSFIYVHKSNGLVRVENIYTAKHIDGNPEWKHVSSVNPNVVLEQILRATIKDRNLIIKHLLK
Ga0209500_100006773	F006262	N/A	VFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVDYLEQDGIITPTDAQIYTKMVAVVLVAATSFGGDFSNFRREASYRMGMS
Ga0209500_1000067736	F032255	N/A	MANSQGLAYQFGSPATVTMLDTDNSTPIFTALASIESYDLTHEADTDEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVGITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAVALNV
Ga0209500_1000067737	F006107	GGA	MNAVALRAELAVADYLAAADWSTSGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAPSNDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0209500_1000067738	F005024	GGAG	MTVDSSKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGAPAGNINRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTVNLNGGHGLYGKAMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETTEMINHMTEALLANGKVLEDNGISIK
Ga0209500_100006775	F010611	GGAG	MTQREYAKHAGVSHGYVTQLAAKGMPMHSPEVADAWRKKNIRSKSTTQHIQSPPIPDAPAIEQEGPYRPIEADTPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKT
Ga0209500_100006776	F019637	N/A	MQNNHIQFLVDQYGLINVAWFIRLMKRGTTPEQIVGYCVPNSQDSRRDGVFRALQYAGDVPDSMLPPEILGALKP
Ga0209500_100006777	F044973	N/A	MKTPYDLDRVKLLNEAKDLVALGIKRGWLSYPRSVKLSALGTPIVVLEEQEDYEVTATAQDADICRKAYDLRERDLSLDDVAKACGVARGSVAYIIAKGHEMYLKQQRIDYNTTTVTYVQPKV