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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10000627 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29622 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025611 | Metagenome | 201 | Y |
| F025740 | Metagenome | 200 | Y |
| F042898 | Metagenome | 157 | Y |
| F065777 | Metagenome | 127 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000062717 | F025611 | GAG | MRIALCFSGQNRTGHVTADNIKRYVGDLLPNCDVFAHFWDSETRGTGYANRLGVPSTDIEWHSPRTTDPEKNVEFYRQWAPRTIMVEEYDLQPNRPKWGGRRWDPVEQKWHVSMWRSLYEANKLKMDYAQKNQIVYDYTVRLRSDLVFDSGKSLKDDLALIQNPNMFLFGDHYSIWPIHGMTRVEDILWIGPSQVMDQISTYYACYTNTVPNIDEPHEPGYQDWQWHSASWITHQLGYQFYPLKNNQMRIYTEQDIDLGIDPLDPGFGPPGKPGAFHNKQM |
| Ga0209500_1000062725 | F042898 | AGG | MNKSKLTIRVHDTNKIYTIAEWCKANLAEDEWDMTAINLINPPDYKFHFECDKTRLQVILQHL |
| Ga0209500_1000062739 | F025740 | AGGAGG | VTSKQTTWAIFFIAVVTLLILLTTIQKVDDQLERSRLAVVDMQKQIDKLKAEDQELKHLVVKLTNTNLALNKDLDVTQELQRKQAQAILDLKKGKKR |
| Ga0209500_1000062740 | F065777 | AGGA | MIHELKQLTTKEVMTMIEGSVKAIVDDPDYFYSSGVGPQYSKLTPSGCDMVLKTMTALLPLLAQAQERELDERAKSITWNSLQEEDIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |