Scaffold Ga0209500_10000578

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000578
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31093
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000057813	F005053	AGGAGG	MGIGILPRGSILYIEAKDLLASPAGTVKTWNKVTEHNRSALELSTERIEKIVRTSNGTLRKNHIADKRQFQLSWEMLPAYRTLTVDGGWGAEDLRSFYFGDEGKQSFNIRINLAKTGLNQSSAGYESYTVIISSCNFAVVKRGLQPHFNVSLTLDEV
Ga0209500_1000057826	F001464	N/A	MARENRQRLRKKFVYFFLNGKVHKVLRLSRARDEVIAWSYLDKKRMMYSYSQVDKNMEKAYTITEVSKILGRHRVTIEEYILQGKIKQPQKVYPISNPDSTWSKYMLSESDILDIHQFIIDAGHIRDLPSRLELQALLKHNLIMYTKTEDGKFVPVWKAE
Ga0209500_100005785	F005054	N/A	MAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLATTVLATITSTLDENNPGTYSVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAEKYARKQIEEYTGQKFYLYDETVMVYGYEYDTLPLPAKINQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWDKVPENVELATAELMKDYFSKDTVWRNKYVKSISTFDWDFEYRGDAYTGTGNALADNLLADYVLTIKAEII
Ga0209500_100005786	F001229	GAG	MTSIVDSVLSMNLDVYRQSEIQDTETGAIIKEWNYYKTLSCHAKGIISNTATSGSGNKQVFSNKYMDEQVIQIRTSEKLTAREKITNIRDSDNNVIWQEINYPNDTPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQIGQ
Ga0209500_100005787	F001900	GGA	MLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVISKLTTNKPFQNAFGKMMFDQINLDFGNYIDSLARSKPKSLHHVYEWKKSGNKTARLFKLNKTAQLGLSFGINYEFLPSKSMVPASSGRRRHVFANKASIVEQGKPLVIRPKNAERLVFQIDDETIFMPKGASVTVKRPGGTGATNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALRVPSNIKKVQYSFSANTIRSQADSALTLSFGGAM
Ga0209500_100005788	F000258	GGAGG	VTANYKLDAMLELRKYLWEELYTRGIFDEDDYWSDNLNENIIPIIPVQQSPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWKDLSNKFKFYSIYIADISPTAPSEELQGFFSSEIILEIKYSRITDSDGSSSTLGRFL