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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10000481 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34325 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (85.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012435 | Metagenome / Metatranscriptome | 280 | Y |
| F016520 | Metagenome | 246 | Y |
| F017968 | Metagenome | 237 | Y |
| F021293 | Metagenome | 219 | Y |
| F051918 | Metagenome | 143 | Y |
| F065786 | Metagenome | 127 | Y |
| F069850 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000048125 | F017968 | N/A | MKQQQSLIEPKKASNLASLSSLERLNLQETMRHTEALEWIRRYRKKALEEGRGEAQYWWQQTLADIAKRRGQAAADDLRRRMNEQKDKK |
| Ga0209500_1000048130 | F069850 | AGGA | MIISQISSENATFINVLHGITALVTKVTKGYAVTLIDTDAKKIVATKIYPLTMFDQAVAYAKKIANV |
| Ga0209500_1000048135 | F051918 | GGA | MIEHIKDYWRMPSAKELAAKELEQAQRKLLDALSAQEYAKRMADYHSDRIKRLTAYLKDE |
| Ga0209500_1000048138 | F016520 | AGG | MNTPACPKGLIEFECEIEGVDLVCFLEYTPFESGSLDERGLPNEPDVQESMELVNAYVKNTDVDIAHLLLQYLVDHITETALEDFKND |
| Ga0209500_1000048143 | F065786 | AGG | MNKDDLITLLRITGAQEAAIDAVCAAYDAGWNDALDNASKRIVGLPFGDTAASFAVFVKQAKTQA |
| Ga0209500_1000048147 | F021293 | GGA | VIQLHKWFPFVFPKEYDVKQVAFEKRVERLEFEYAQVVKAEKVREAVEAYDLELYNKRARQTTIELEIFSNGRNFDKYV |
| Ga0209500_1000048149 | F012435 | AGG | MSDIDLVKYGVLWQKVESMEAKIDKMEAQLETLIELANKGRGGFWMGMAFVSAISTLLGYISHYWSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |