Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10000395 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10000395 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37985
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (78.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37985

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (78.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y
F067746	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000039532	F000340	N/A	MNIHDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHKLRNEIYTDIHQLQVKVQLLEEREKYGKK
Ga0209500_1000039534	F067746	GGAG	MDEIEARLNSHEAVCAFRYETINARLKRLEKIMIGSAGFIMASLIAVVLKL
Ga0209500_1000039545	F002085	GAGG	MNVITPVDNTNNIRIADFVRLTTPTETFRFATTASVLTVAAVDAQPFEAVGQLIKIGDATKDIKSTANETTVTLVGIDTAMLGLVLGQNIKGSQIEMWHGFFDTDGALITAGGSGGLYQFFNGYINNMSISEQWMEELRMFVGTVTVSASSIQLILQNRTAGRYTNNNSWTFFNPTDTSMDRVSFITTINYQFGKTA
Ga0209500_1000039546	F000934	GAG	MSLNQILAISESVQVNDHRFVGQMLSRNQRISTSEILTVVPFSFDLKPMNYLLYSKNRALLNSLRIPDMALQQYLNFGTTGWSNYIAYQGSMNSGQISACQWQSSSANKNLVLGSLPSIDAGAYIVKAGDFCQVGLYSYIATADVVRGAGSTVNIPVHRNLITTISSTVNAVIGEYGTTVSMGGSTYTGTTFQVILRAYPTYTLMPMKDDSFISWSGSFTAFEAVL
Ga0209500_1000039554	F012668	N/A	MGIARFENLDINNVTNSIDDVGQQTTSTTKWFSTRARVGDVNNSLRISDRYRVYSDLVNFTFNYTPNLKQIVDDQNLYSITWRDRDWRITDIRESNDRMTVMMLCYRNDPTIPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10000395

Overview

Ecosystem & Geography

Associated Families

Sequences