NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000360

Scaffold Ga0209500_10000360


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39610
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (62.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012023Metagenome / Metatranscriptome284Y
F023035Metagenome211Y
F024537Metagenome / Metatranscriptome205Y
F031374Metagenome / Metatranscriptome182N
F042301Metagenome / Metatranscriptome158Y
F048947Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000036021F031374N/AMNTSSNAQTINIENPKFYESSNGSLLDQIIDVSFGWFKGLDSEQKAAYYSSLILALEEVQPGQFARWYKNNASGTVRVAWQYPKNGTMCKRLHIHLIAHDTEKNMQTTACFNEVDNRWHWHN
Ga0209500_1000036041F023035GAGVNPVTKTLLIVLGSILGIFLVPAILIIFHEYIDAFIFITSVLACFMLFGYYSYEELLPEFQRAQLEEDQIMARFAGNPEKIRFYRAFKKHFDGDLNLEQLEKWLIDHPRKH
Ga0209500_1000036055F024537GAGGMNLEKQILDELGTKMQSEIDREVMWGMLKSLGWRRVNLDRFTDNHHAVDITYWLAEHCNHAFERRGADFIFESEVDAVNFTLRWK
Ga0209500_1000036057F048947N/AMNSAQTRRYRRAFRTLEHNVLIDANKHRAAGNWCAAQFGKRWEAIGKNTDGLWTMFWAGRDNHDKYIFHFVEEQDMLMFILKWS
Ga0209500_1000036066F042301AGGAGMIKTGSKWSSVTGQEFRVLDVIEIDSHTWVHYIKENAPEDDIREYSCYIESFLSRFREQPND
Ga0209500_1000036070F012023AGGAMKQRDYLKLNEHINEQAYESLFGKELTEEQLQKLIRDKFERARQYHEALAKAPTFSVY
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