Scaffold Ga0209500_10000064

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000064
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98771
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (78.34%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014843	Metagenome / Metatranscriptome	259	Y
F086580	Metagenome / Metatranscriptome	110	Y
F091303	Metagenome / Metatranscriptome	107	N
F093225	Metagenome / Metatranscriptome	106	N
F104430	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_10000064107	F014843	N/A	MTSRKTEDAEHWLNSHGIINYDDLIDRSFYLEGEDLKKRQFVMSRSRAPIEMYVDSDPSMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRTWNQIEESINRVNIARSKDAANPKELEFWDD
Ga0209500_10000064110	F104430	AGG	MGEHSFVDRYIELDKQYIQHKQEQYKHYKEPNLPYTEKLFWDKLIHLGWRKDYTTTECLVLVCSVCEGAITKVVLKNNVNIRPLLNIEDKVEIHKTAYCKATAKQSKA
Ga0209500_10000064124	F086580	GGTGG	MTTQTKDSFYLERLKTKFNNKDGYWSVGDTSTSIWQPHTRNKFDVLTEQKLIDITFDEQTYKSFQLIIVGFNYEFRSVLDLNGNTTDNYLADNEIGGYANDVKSFVHYEGIAYEIGGVGDTRQNLNWLGELATLYIYGGDTDPNKVIKKCQKKLDLLSQIVDVRDELISISNERIGSYDTKNPYNINVGDQVFIQAHGRLRKGKIVSTTGSRFNVAYLTPSNHSDLKYKTLRLDCLWLPINP
Ga0209500_10000064156	F091303	GGAGG	MAQLNRKPLTINPNRKTKKQEFSFNTNLGYKSKANPSIVTWAAPGKGVQGESVNSQNTASKFIINRNWKPL
Ga0209500_100000644	F093225	AGG	MTNNMIITVFATVGIITAALLGLRQLVEPYKKKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLSVSKSKEPV