Scaffold Ga0209500_10000063

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000063
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99149
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F048781	Metagenome / Metatranscriptome	147	Y
F051136	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000006387	F051136	GAGG	MNMTDKDWLERVTIAYRAYPYPSKDLETFIHWLYNQYGIVEPKKENDD
Ga0209500_1000006391	F048781	N/A	MSGWNTITRVRRLEDQVDKLGFKFKSPRHGDWEQQERSLALVPKDADALPIYSRDAELFVGTLEGLETWLHGVRWAREYDMMLRLSDEKKRARKEQDERNRILLKTIKDSKIPNRIKT
Ga0209500_1000006395	F001957	GGAGG	MNSAEKANNIIFRAKHISEFTVITELPEGFQFNGRVPFDIDISDNTLEAKVWAMDFDEAVKILDEYLESCK