Scaffold Ga0209500_10000047

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000047
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108236
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (63.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F044299	Metagenome	154	Y
F051684	Metagenome	143	N
F056408	Metagenome / Metatranscriptome	137	Y
F085390	Metagenome	111	Y
F088243	Metagenome / Metatranscriptome	109	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_10000047112	F044299	GAGG	VNQISQYLVSIDRPPYVNGRRVGQATPCVSYGRPSWFISFLDGYMHASDPVFTDEDGLNGAPSVREYATNLGYEPCMN
Ga0209500_10000047113	F056408	GGA	MQKRVKQLMAQTLDEKFSHTWSTLTPADLEKFTTHFARLLIKECADTAYRFDGLTLGQGYTVAKHLRKHFEVES
Ga0209500_10000047114	F089835	AGGAG	MRLTPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGKIAEQCQSYEFYWEDKLLSLMD
Ga0209500_10000047162	F006099	AGG	MTSAKILYLARYRVPHAIMSLQPEFTRHLIGVDRTCIASPVPKDELWTVFEQYGIDTSKFDYAPDSEIYKRYPEVNNWVFDGDYRTYWLRQQAIKFAFLDMLDYDLMIMHDCDCLLIKDYEPFKDGKLNFMVLENERHSWGYYESIKNALGFERLTPHCFISEFVPVLKKDFNDLVKFLEETHKKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRNDITMEFQRRYHYDSMEKIGDFDPMYHTAVCDAVPDLRFSLQYDWDKKEIPQFDYYMDKIRERLAQ
Ga0209500_10000047164	F004863	AGGA	MHLMVAGCSFSAVSQTHPGTAWSEVLAKKLGWRLTNLARQGCSNGGIRVQIDEIRRQRPDFAIVTPTFWDRMEIPADSVPYDWSQAPSSGTNPPLEQHLQNRKLGNGYHREDGIRNVNYGQEPSNMICETIFTLAENYEHPYRMGRITKQAQNGIRHWIDSIYDNAWKKQCDEWIMREGMIMMYLDGIKFIVCPNLLWPFDPDNQAQWRDAFPAVIPDHYINLDSAKSPQAICGNNPFTGEDPGYHSSAQGQKLIAEHFYDIWYNHFK
Ga0209500_1000004739	F051684	AGGA	MYAWIIKHQDVISGFVSGVSLMVAADYFARGDMAYGSLSLFVSVVNLLLSGKKMGQHGQS
Ga0209500_1000004742	F085390	GGAG	MVDISNGVNMNDFLQALAPFVYGFVLGYFWHPVWNLCKRIYQEAKLAKQQWRNPNGS
Ga0209500_1000004783	F088243	AGGA	MDMDQAAVFLAGSVLTALGFIVVVIGLVVINNIIARYWRPVRIFTEDSWKGLGGPARFAELPEVEKSQEPTLTKK