NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10250121

Scaffold Ga0209502_10250121


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10250121 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019651Metagenome / Metatranscriptome228Y
F033962Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0209502_102501211F033962N/AMNMTDLKQYMAEQKRIKVIQWNKERQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWSFNNTKNREVFTK
Ga0209502_102501212F019651AGGMTTLEKFQEEANIKFISDGFNSDVEIGELSTADGYELFYVTQDIQNLNYENELFYYRPDFDTIMGEILNARISSNVVNVCVYDIEDWFDEYDMLNYLESEMDEESFEEFTNEEE

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