Scaffold Ga0209502_10177142

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10177142
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038416	Metagenome / Metatranscriptome	166	N
F042626	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_101771421	F042626	N/A	PYMEAVKLHSEVYKYINRVAPTLYILNACQSELYVPTFNYSLEQTYKLAMANDDLSKSIVETIWATHDYYIDTRLETSLVLIKQGLRNEETRSEVIEACAALTTTVRNRFHWIHHVIDTR
Ga0209502_101771423	F038416	GGAG	MSRNSVLWMQHEESYVHKVEIVHQTEVSCSNGHDTHYMKIREVYDTYGYKEPGRVVCELCGTTFRL