Scaffold Ga0209502_10140029

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10140029
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1176
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019911	Metagenome	227	Y
F060348	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_101400292	F019911	N/A	MKTFKQHIREYVKGAPAWTESLSTMLFQLPRAGLVDVKIPLSPSIFSRVWPKPVRSTVFHLTNDEGVRGLKKMEGGKKSISAFYNIKTASIQDGIMTAGGYVVEMDADVLAAAPDDIGSQPDKTGRRWLVFDTLTTKMGGASKLRGMETDIEKMMTDILAKNDLGPYKKSLTTAELNKGWIYLGKSASGKEKSVIIKDYLDGIEKIMTKYSKPLKSIFTDYAFDKELVPDPDSGDFSLWDEIVVNNFQVVKVHVAQEFSPDFDGDDDIDGFPFELYDDNKDLVSYIDRTRN
Ga0209502_101400293	F060348	AGGA	MKRFKEYLTERGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVF