Scaffold Ga0209502_10091242

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10091242
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1567
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051048	Metagenome	144	N
F062247	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100912421	F051048	N/A	DLWSLNPDTHEVEHDPHTLANRTVAKQALAEDLITVEDRTTGAEIRNFLSSRLTMKALTTKLNDFEQSLAKAVSLDDFIVPQDRMLVGIVNSQIVKYNKIIKEEALTADAVYGTYGKVKERLDVELIPSSRFWLTDWGTFCYNSITLEGYKTSFFYKNELEIGKAVKVSGTVKKHTDNVTTINRVKVKDQNGK
Ga0209502_100912424	F062247	N/A	MFKSKKEIDTLFGENEGVAGIVIAICATLYDNGVNVIHVGGLCRLLGVANETAQENDDKIFELPEDFYEQIEAMGFEKIDEG