NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10088087

Scaffold Ga0209502_10088087


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10088087 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026043Metagenome199N
F058516Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209502_100880872F058516GAGGMSNARHCMTCGKKYYPKAWNSYPEDSYHYENGDTTRHTVDPSHKRFHSLGCMKEFISRNSIAFANLVDSIPHNMIQDINNQTIEKG
Ga0209502_100880873F026043GAGGMYTSVIRDDFDNEVTLEYMTNHLENTRWFKITYYHKGQGKEVTRYGNWDSKCRAWRTKNNDIAICYLQVDDNNEAQGYRTATGITDIQGKPKEDRFNANLPIVWDNISRLDS

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