Scaffold Ga0209502_10087811

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10087811
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F011253	Metagenome	293	Y
F060420	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100878112	F001839	AGGAG	VKYFEKFDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMIRTGIKTVPTLVAALDRLTLFGMLARKQIENGTCHYVFDKPTMQEYILHNLNKRKKISLSKNKQQRDHSKARSYPNVINIKGVIKXLYNFGTIENFTWDYRKPHSI
Ga0209502_100878113	F011253	AGG	MNDRKAEIDKIIKDMVKNKSLPYANAVKKIKKDRKGYYQQKDIKLKSKSLSTDRFQEYLKAIQEEDNDSN
Ga0209502_100878114	F060420	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKKTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVK