Scaffold Ga0209502_10082356

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10082356
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1676
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F005882	Metagenome / Metatranscriptome	387	Y
F059349	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100823561	F005882	N/A	IANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMNRTPNTQTNGKMTNIGG
Ga0209502_100823563	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLTGTTYEYVDPGTRLVIAAAVDTVGTAAADTTMSFNVNNAEFASAASVSQLVAGEPFGWNGNYVMNDMVTTGQIRNRPVITFTNNTASTKVVDVAIFIGG
Ga0209502_100823564	F059349	AGGTGG	MAQEFTINSEAIESKINSLLPSQGGFGAGVDFSASTMIIPTIDVTSAAQGSILREDLQTAIYFTGANVFDINNATVTIITNTGYYRITG