Scaffold Ga0209502_10074237

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10074237
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008152	Metagenome	338	Y
F089417	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100742373	F008152	N/A	MSYDSLRWYKDQICNMSWDEILELMDERIKNGSWNKYVESLGNPPHVIKHDYLMKQMEKE
Ga0209502_100742376	F089417	AGG	MTSRFSKKSPVDSIIIDMILDHYNMQSMSGHPEILTGENFNDICKEAETIYYKTILITKQPGVAY