Scaffold Ga0209502_10074072

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10074072
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1795
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033962	Metagenome / Metatranscriptome	176	N
F067130	Metagenome / Metatranscriptome	126	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100740721	F033962	N/A	MNMTELKQYMADNKRIKVAQWNKERQGNHCQGFTQKEFEQSMEVDRIKSRTRRSYSKGNLWSFNNTKNRELFTK
Ga0209502_100740722	F019651	AGG	MTTLEKFQEEANIKFTEIGSHADIEIGELNTADGYELFYVTQDIQNLNYENELFYYRPDFDTIMGEILNARISSNVVNVCVYDIEDWFDEYDMLNYLESEMDEESFEAFTNEEE
Ga0209502_100740725	F085730	N/A	MNYKEENWYNDIIDRLKDNEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVYGRADNIGQAAYAALYDLFEEGDFTYEDYNELQEA
Ga0209502_100740726	F067130	N/A	NIIMQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGNEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK