Scaffold Ga0209502_10038058

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10038058
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2736
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009291	Metagenome / Metatranscriptome	320	N
F056325	Metagenome / Metatranscriptome	137	Y
F076876	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100380583	F076876	AGGAGG	MKNTNRFYAGLITMTLGFSLISNVSAEDKKFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIHDGSSGELIVCDPTIGCY
Ga0209502_100380585	F009291	N/A	MIFNLISVSKMLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSMLYEGFSRHYLIVIKRDFMYNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNITRDRMKKGGFEVLPDDPDTGGDNPSNLRDSMMIEKCMEEVIKECGKDNPEGVELFSKVKVEGFAYSELTNTYGKTVSNLKKIVSEVNTLLKELIQPCLERAE
Ga0209502_100380586	F056325	GAGG	MATRKINQDALIKKVFKKVNKDLGVAAKTPAAKLKSFNEKVKSAPTPFLYRIKDVWKAFAALMAGFFTIGFIIARLTIPTEAVLQTAAVSPDIYDFNTFDSDGDGEWTLAEA