Basic Information | |
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Taxon OID | 3300027780 Open in IMG/M |
Scaffold ID | Ga0209502_10037791 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2748 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002047 | Metagenome / Metatranscriptome | 599 | Y |
F085894 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209502_100377914 | F085894 | N/A | MTPSKVNTVLQKLNLVLEDFQMLRDGSWSPETDSCEASIDNITDVINIIENG |
Ga0209502_100377915 | F002047 | N/A | MWDLLQKILKEKMTPNQCLILFGMKQGISWPQTSKLDVEELQTLGFLEFVDDKYIMTPTAKLFCVKLDNYFVKAKKKTDIQLMGKDFLDKIHTYREIFPAKKLPSGNPARNNVKALGENFRWFFETYDHTWEDIIKATKMYVNEYRDADYLYMQTSQYFISKQDKHKVKHSRLADYCDMIVDGVSTEDEHFKETVV |
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