Scaffold Ga0209502_10008578

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10008578
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6906
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039670	Metagenome / Metatranscriptome	163	Y
F052204	Metagenome / Metatranscriptome	143	Y
F065434	Metagenome / Metatranscriptome	127	Y
F084741	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_1000857811	F039670	N/A	MNKLTYIITEGDETIAMEFITDRTAHWTEQQYLRHRTDCTMNLVADEVTDETIPVARYILNFE
Ga0209502_100085783	F065434	N/A	MRELRWDLSRIQIAWLQQIRNQTWLKLEDTEMINSILYRTDYDETEKLQLNNIREQYITYKKVIIENQL
Ga0209502_100085785	F052204	GGA	MDIYTKTTIEIEFAKGQEFTPTIVFEGAELESKTFSNKTHQIEELIDYVTYNENGGCDVY
Ga0209502_100085786	F084741	N/A	MKNYQAILMIIIGFGLSIGTMNGFVQNYIGFAGVDNEMAFSFMGMIFGTLGIVGIDYKKLLNGLK