Scaffold Ga0209502_10007973

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10007973
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7236
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F007054	Metagenome / Metatranscriptome	359	Y
F071647	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100079733	F004489	N/A	MANPIVCIEAINNVRTSVQGNDPRTWMKACAIETLLKGKSGNHFKACLIGKMESTKQHIENPQGYADELYNKIKGACSN
Ga0209502_100079736	F007054	N/A	MSSKVLRFEKSIEGVKFTPAQKKIVNLILKGWEIEIVNRHHMNGGEMMWKNPNSSYLEHAGKVYKAFFNVFYQIKKQKGIEVPTKLFCS
Ga0209502_100079738	F071647	N/A	MTLRKTISKSEFTKSIESTKSNPFNAVRKPSTSKYVMRGGIPHKWVDGSLVSLTKLSK