NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10004965

Scaffold Ga0209502_10004965


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10004965 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9814
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F043412Metagenome / Metatranscriptome156Y
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209502_1000496513F007892N/AMGRLQEISPLQDVVNKINAKADFTHNINNTRLERYTVSTQNVLKTANPSLFSKNTWQIVDDAFNSDHELFGGWLSEDDIYFLDYGLSVSDLKEAMKIAKFNEQLAIYDNVSQKVIDVA
Ga0209502_1000496518F043412N/AMTKEELQLKVNELTQSLDTFNKNTEMLKQDLIVAKNALKVADRPKITQDQMTEIQDAIYTVVNNVDFTDCNNYDMDFEIDYDNRIAVSSMEFNNSDEIADDLCSEIGSLFNVIDTEDEA
Ga0209502_100049655F061271N/AMIQELDKVVHQWCNDNDRWMYIEYDTDGKVMGLNFMQGDEYECFKKSWCVSDVGMTAFYKQMLYTFSYEQKNVPEHCFINSCMWSYHSAISEYEDNNCKIGNATKCYANKCCKAISGR
Ga0209502_100049657F005129N/AMNYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGIKTQWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFVPWEAELTRHIEEVVAKRIAKEYPGCDVNF

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