Scaffold Ga0209709_10204461

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10204461
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 915
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058446	Metagenome	135	Y
F064091	Metagenome	129	N
F064111	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_102044612	F064111	AGGGGG	MNRENLRECIKCGKQTHDREYMCLGINDIIEDHVPEKTIDNFEKKYLKGMSIENYFCGPCASQSLKIMEN
Ga0209709_102044613	F058446	N/A	MPNKLIEKIRAYLKKIDLESLQHKYQDQSTNDDFVQYEPLPQIYLDNLNNIDDSNKEKMLQELADRNGF
Ga0209709_102044614	F064091	AGGA	MTEYKKLELLHSQLDELIQGNQLPIDELKILQSFIEDIREKHLTKKEGE