Scaffold Ga0209709_10171441

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10171441
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F025387	Metagenome / Metatranscriptome	202	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_101714411	F025387	N/A	EMLVRIITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEDKDGNKTTS
Ga0209709_101714412	F050676	GGAGG	METKLPVKSRVADKYQPMLTYYAELIGLCHETVTRTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLQKISTPTIKQDIIAERMSK
Ga0209709_101714413	F003834	AGGA	MSSSKTPIRQTEMDYLDHFMETKYDERKNVLKTEMQDTIDTESEQNFDAFKEKLKLTKLHEDVRIYFDDHEKFNNEMDTILLEKKGKLDNAINDLEVKLENWKKVRKWNTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWGVVGKEMAKEKINTSTVPKPEFLAITK