Scaffold Ga0209709_10168615

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10168615
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018739	Metagenome / Metatranscriptome	233	Y
F025303	Metagenome / Metatranscriptome	202	Y
F087333	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_101686151	F025303	N/A	NPRWRNDIMEKNDNYFDDKSESEKMRNVANMVNDIVNVKPDETLEVTPAPEGEKVELPEPQVDPLVELVGKTLSAGKPKGFFMQGVQTDDHPKL
Ga0209709_101686152	F018739	AGGAG	MTTQNYEPTLDLVKERMDQINGLMEKFKDLPEVQQKLQGAKDALQESEEEIMNYYDLTDIANRDLN
Ga0209709_101686153	F087333	N/A	MNDGAALSGAAKFTNGAATFIDGASGSNTTFTTDALEAGDCVIGADGLLYRITAVASQTAATLDRNYEGTTADNQTVLRVKLPRHIKITNDDGTGMSLQDLGVFGVSKAEADAGVDNLGAVAEVLDGSCHRTVPAVTVAAPPTNTIAVAKVVVA