NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10133267

Scaffold Ga0209709_10133267


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10133267 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004771Metagenome424Y
F018267Metagenome236Y
F053548Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_101332671F053548N/ARTIREHWRLSMKDSGAPSIGDLVVALYDVERDISCAGVVMEIADKECRILWSSENSPIGWWNCSELKVISPSGPPKKFNALNIHLTT
Ga0209709_101332673F004771AGGMNHIKTGDLVRMKLGMYDSDLVGIVMELHPGDLMHPQHAPQIGIKWFGGSGKMDWEPEGWLEVISESR
Ga0209709_101332675F018267AGGVKVGDLISFKPKSFGDDDWSNPGIVLESYEHDDRWFGGWKDLIWVVWIDGYKCMVNERNDDVTYLTT

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