NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10123203

Scaffold Ga0209709_10123203


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10123203 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1316
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039182Metagenome164Y
F092712Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_101232031F092712N/AMSKKTSFGKYFDDQRDRIVKNMQNKNKQQNVEWMEAYEKREQLKDYNHRRSIQMPVDSTTMKDSLTPTET
Ga0209709_101232033F039182GAGMIKWIFIIVAVVTALSLNGCAKDATAEDSPTITSTETQDEARTDAASGEVIWIAIVTIWHPTISRTIDKEFTSEVNCWNYYESGVGESKFGTQHLTHQGEKPGKSHHFGPDYLNYPIRTYNGTEETGQVWLTCDIKGRYE

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