Scaffold Ga0209709_10058681

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10058681
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2178
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017718	Metagenome / Metatranscriptome	239	Y
F052651	Metagenome / Metatranscriptome	142	Y
F087333	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100586812	F052651	GGA	MDINKEYFSGKSEAEKLRNVSSLVDSIVNAEPVEELKVDSGVAEGEQVELPEPQVDPQVELVGKILSAGKPKGFFMQGVQTDDHPKL
Ga0209709_100586813	F017718	AGGAG	MTTQNYDSSLDLVNERLKQIDEIKDKFAGFPEVQEKLQGARDALVESEEEIMTYYDLTSIEKYNKS
Ga0209709_100586814	F087333	AGGAG	MSLWGMNDGAALSGAAKFTNGAATFIDGANGSHTTFTTDSLEPGDCVIGADGLLYRITAVASQTAATLDRNYEGSTADNQTVLRAKLPRHIKITNDDGTGMSIQDLGVLGITDAERSAGVDNLGAVAEVLDGSCHRTVPAVTVAAPPTNTIAVAKVVVA