Scaffold Ga0209709_10058567

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10058567
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2181
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067736	Metagenome	125	N
F077925	Metagenome	117	N
F082699	Metagenome	113	N
F085682	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100585672	F067736	AGG	VSFNPSDEKPLSAYTNEELLGFLGIESTLKDVFRNYNMSDEEKREFLLEKAQEKNQKYI
Ga0209709_100585673	F077925	N/A	MVDVNETYKKNLKELVGSAFFSIKYYSTKEQRYKEYGSLRFDVKKHLKGGESTAKEHTFTVYDMSAKHYRSFVVSKTVYVKCGKFYTQDDILSGNKKGLSSVI
Ga0209709_100585674	F085682	AGGAG	MSIDLSKYEKLIRLGTLTEEYEFAQDELHGILKMQQGWDIELEIFVLLDRIAKELSRRRIASDEKAEFMRRLP
Ga0209709_100585676	F082699	GAGG	MIKLIKKILGVDVEIESLNTRVNRMEKALTDLEYKVADLSVICTFLNELRKEENNENNK