Scaffold Ga0209709_10056749

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10056749
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2227
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F010325	Metagenome / Metatranscriptome	305	Y
F013774	Metagenome / Metatranscriptome	268	Y
F037421	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100567492	F010325	AGGA	MIRKDQVEGKLDQLQLSVERLKSSLVIPTDPGDQGTPIQIIVNALQQIENQIDNVINLIQLED
Ga0209709_100567494	F013774	N/A	VNDKLLKLKRKKLQQQILYLRTELEETEWIFQDCLKEFDVEFRKYFKDPTQKKKGDVATDSPEYDIPEKDVNMVFKKIAKETHPDKLINKDISDEEYDAKVDMYKEAQRSVKNRDWSKVVEIAKELGIDISDIKSDDSEYLNESVKRLTEKIKQLKTTYAWRWGNTHDQEREIVKGMILQSLGLQRIEEKENGNKR
Ga0209709_100567495	F037421	AGGAG	MSDKPEHTTYFRELIRKLKELKVSAETGEIVVTDDEDVLAFSDLDLPFHPGIFDEMSSDEKEALFIWLNKENLPQA
Ga0209709_100567496	F006865	N/A	MGKINRIIKINDVLYECLGTMSVKGSEEKGTEFWKKQWGADNVLRNGNDYYYCRTVIDAEFDDIL