Scaffold Ga0209709_10052544

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10052544
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2344
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017909	Metagenome	238	Y
F023213	Metagenome	211	Y
F023716	Metagenome	209	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100525441	F017909	GGGGG	MLRRDNYFVFIVTRENVTTGYKIGDIGTGKTDTCVGINDAAYGVFMTAPKHHIELCAARDRKSPIALSPEQIRDYVFDFWGPKEPKKSDTQEEKEVVWKPHTW
Ga0209709_100525443	F023716	GGGGG	MKRRKSWDVKPEPLFRVPISASVNGYIEGVSTRGEPTVKVGDLVKYIMPDDWEFHAIDAPIFTDETALGVIRSINWMLIETSKGAYYAPEAEVYWGINGSTTKHTHDSLEMANAV
Ga0209709_100525444	F023213	GAG	MPFKVGDMLKYHHPSSGDDEQMDLYHFGKDYLDGKLALVLEKSLIGADGTYDYLCYIDEERMWISEEVLKEVKDENKKSNI
Ga0209709_100525445	F105880	GAGG	MRIRKAIFSRAITFLSMFLSPVDAEELFSELRDIAEKHKKH