Scaffold Ga0209709_10039308

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10039308
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2841
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041753	Metagenome / Metatranscriptome	159	Y
F055207	Metagenome	139	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100393082	F055207	GGAG	MLTGQWNPHTNPKDNRGFTSIADIVNDIADRALGGYCDINDDCATYPRMILNWYKGKDCPEPLSEEVYQQVMRENDERVYRAIWRRIHSRLY
Ga0209709_100393083	F080510	AGGTGG	MSWIEDDGLRREEGGILLRNNQDHVPSLNVGDRFFDCANGRWATLLRIRPDEEALGAPFEALYDGCELFAPFVGVAMHCDIGEAT
Ga0209709_100393084	F041753	GGAGG	MTNYQVHFEYIARPSGTGWVRRGIRTVKARNEAEAKLKVASVVDGSFGHWVNRLANEVVV