Scaffold Ga0209709_10032452

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10032452
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3224
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100324524	F006919	GGA	MKTFKSYLTEFTIRSTSDIVFEVGSQGQGSSALKIPISGPMFKRIWPDTIRTTVFHVLNAEYIYDLKKLEGKKKSISAFFSMMAKQFESGIAAGGGVVAELEADVLVSARDDIMSQVDKGGRRWVEMSWFENAAGRGDGAGFQAVERDLNVLIRDLVLKHLEPILGDKARTEPEFYLWADMKRHLKDSKKLSLVIKDYFDGVEKIIKKNSEVLGSIFYGYAKSKRQTENSWDEQIVNNIKIKKLHYIPIKVDNEEEDGNIENEEQQENIDAFVEKYSSISAKRWDYSSELEIYTRKVVAKERGK
Ga0209709_100324527	F000245	AGGA	MKTFTRLKESKLDDRLDKIVSNEIKKRKLTKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRKMEPSKGQPKGMMAFNYQLEDK
Ga0209709_100324528	F002715	AGGA	MPEELQSVKLEVGLLKNEVEVRGRQIETLLSKLDLTADKLQELTIEIKTLNARQGDNLRHTTSMSDEFKILHTRIGDLYDKHLIMQKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD