Scaffold Ga0209709_10031538

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10031538
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3287
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007345	Metagenome / Metatranscriptome	353	Y
F021646	Metagenome / Metatranscriptome	218	Y
F087031	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100315383	F007345	AGGTGG	MEWLQMNWEWVLLGFMILEKIVKMSPSDKDDIILDVIVQGITKMVKGEKK
Ga0209709_100315386	F021646	N/A	MRKTLSIIFYHIGHFADRLLWFNSPMDEWIEDKLADLYQWAMWQSVEFDDYCEIWQSDNQITR
Ga0209709_100315388	F087031	N/A	MGTNKQGVTMSKKEKEPTYKLFDKEYNQEELNALSDEQKTMIQHRDDLTNKINRAEFNLVQMRFGLKAFEDGLRETLNEILDESELDK