NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10026727

Scaffold Ga0209709_10026727


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10026727 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3654
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005547Metagenome397Y
F008590Metagenome331Y
F010950Metagenome297Y
F014672Metagenome261Y
F037424Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100267271F014672N/AEKFKPGDLVKIKDGTHQDGMPDHRLGIIIEFAEALGNRTDSYTVVFLGTSFRLKFHEMFLELVYESR
Ga0209709_100267273F005547AGGAGMMKVWVMQGSYEGEVFSSVHLTQKGCALACISDITEFLDIDDEETALSVMNSCYAFTETDGEQTEAFEWDQEKLKEMTSEQLWKVFGEWCEISWDRMSDRSYHIDGSPTEIQA
Ga0209709_100267274F010950GGAGMMNIWVVRNTCLYSNETYLSTHITEKGALITAIKVVREDLTSGFDEDELEDMRPGMPHHPEEDLMQYGSDQLRSIVDDWWTYSMDMNEHGQYEIHQTQVVG
Ga0209709_100267276F008590AGGVKVGDLVTYMFQRTRWQKGLSVSVGLIVEAGKFTGNTDVKVLWNGETHPGAEASRFLTLVEDYLTTA
Ga0209709_100267277F037424AGGAGMSWSGTVTCSHCYRQGHNLRKCPDYTARVLRNYHDHLGQAAAIDEGDPDYYLRQAERYRLEYMKRTKFDPATGEKVKNKTAKAERMKKVTCGYCGLKGHTRRVCEVVKRDKLVYIEESRRVRVGVLEAARETGIGVGSMIPIRTNGYNNAGEWGTHTSLRYVKSVDWNTVTANRAGLWVFHVIAGKLGAPNQSRWTSRDKILSLQENFNEACSYAELQNEAEPTASLIPSLDPPAGWLECKPSTIDVARQFPTTGNRHQKQRRHDYAWPSGVTAEVIRDLGLEEHWKGRF
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