NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10025786

Scaffold Ga0209709_10025786


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10025786 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3737
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004843Metagenome421Y
F011155Metagenome / Metatranscriptome294Y
F022756Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100257863F004843N/AMQKEDKIMKWMLIIVIAVALSLNGCADTADAEDSPTTTLTETQEETKTNAVSGTAWVAIVMTWNPVNYTIDKEFSSELDCWNYYDNGAGESKMLNSYGTQVLDHQGNKPDAEYMKKHRPQHRVYPTRMYKNFGGWMMWLTCDIKGL
Ga0209709_100257865F022756AGTAGMIISQKRILDLVILNLIQVILTVVTICLLASCAIEPRTPLWLRAIETLPPVEGFSRAGLFTINDKIYVQYCDPQGNQIWMRYNGDKNTWRQSRYNSQGCVDGDDATGPIE
Ga0209709_100257868F011155GAGMLENAVEVVGNFDVLADNVFVLGEGAFGFLTEAKESPYPWMIAAATLAGALPLALVFFGFGWIECSREIVDCGLVSIGG

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