Scaffold Ga0209709_10023621

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10023621
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3958
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F023718	Metagenome / Metatranscriptome	209	Y
F051476	Metagenome / Metatranscriptome	144	N
F073661	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100236213	F073661	N/A	MNTLFLKSGTHRVGMTLDVKEMAKVVKSLRSVRNDDSKWNEIPTAWAAMEEVLSSSSLNRTCAEVGFDAVDPFATCSVYEGTKKVYKIW
Ga0209709_100236215	F001048	GGA	MKIVSTKQFWWRFNHLKRNGGEIIVTDKTPEMDVKDFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK
Ga0209709_100236216	F023718	AGGAG	MIEEIDLSLNRSLEELVNSYFEAENASEEDIDSSAFSALEDYLSGMDAI
Ga0209709_100236217	F000615	GAG	MCRLRCFYECSDGEMGWAEIVLSYDDDIAGHIRHMSTGGRMVISEHIDLI
Ga0209709_100236218	F051476	N/A	MTYWKTKLIIKNKLHKTELFESLSKARLWSMKEAKLAVSHRMLNHTEIVTEITSHEFA