NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10022830

Scaffold Ga0209709_10022830


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10022830 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4044
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006198Metagenome / Metatranscriptome379Y
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100228302F006198GGAMEVELNVECNACNATYTMMYESDDIREEDPAFHCSFCGILMEPYYDEFFDED
Ga0209709_100228304F019388AGGAVRTEQNPYLVETKNKQTLKFSKIDADNEAVNFQQTGKDVEVWHEGILQYRLHGIEQGKLF
Ga0209709_100228305F011620GGAMFDKILQTVLKFFGKKTPEPLTEENNESLEALERIEALDNIGESS

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