Scaffold Ga0209709_10021408

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10021408
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4218
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F014551	Metagenome	262	Y
F023712	Metagenome	209	Y
F047110	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100214084	F023712	N/A	MVDLLLKSDMIIPVMRDKITYELTWKNEDTNRVSSKKFTGEDGKDHSAMDEALELAQQADGNMWPWVLERDGEEIRHGWGGDLLNRGRLFPTCG
Ga0209709_100214085	F014551	N/A	MRDMFKFQYNPARHNGEVNHAGEVFDYVGMIVDKFENQTEGEDFSGLTVELYEDEQPTGQTRRFRWDRLIKVVNLANL
Ga0209709_100214087	F047110	N/A	MKTNKMNTVVSINWSIKDLIRDKVSFDDWHLGIFGVRASRSVLSKIKAKADELAEMKKAVFLAATDEAAA
Ga0209709_100214088	F011494	N/A	MRKYSVIDEKGVVRSFTQSVGEPPLNAFNDAIDLAQSAGEDVVEHHVDGSREVVWSIDTTTDESWDGFRSDAEADGDALASAGWGTDEDYGGGCERL