Scaffold Ga0209709_10020382

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10020382
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4361
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F067117	Metagenome	126	N
F074029	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1002038213	F067117	GGA	MDTKTIKSKIKMLQIPVSEKEFDILKAKADKEKRSLPNSIKIILEPFLKGK
Ga0209709_1002038217	F074029	AGGAG	MKGKFSAVGFFTKHLNNISKKLIGSTSFGDLQTISSVRPRPLRQVELASNVVNFLKERDNRNRRK
Ga0209709_100203828	F020603	AGGA	MKKLIFILTISFLLTNCAKYTPLVNPETSKDKHNGKVIAGNYWKDLQACRYIHKENTATFVKVLHISDETAFVKKCMSEYGYTILR