Scaffold Ga0209709_10017880

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10017880
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4748
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F012919	Metagenome	276	Y
F025857	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1001788010	F000615	GAG	MCRLRCFYECSDGKMGWAEIVLSYDDDIAGHIRHMGTGGRMVISEYFEV
Ga0209709_1001788012	F012919	GGAG	MKISRKKLNREIIKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQISYVEKNSL
Ga0209709_1001788014	F025857	N/A	MTLHRIAPGCTFESEDDVVMNPVIGRKKSVAEKSPKPYYRTSELDNIPDNFAERMRKFKRVEVRKEEREVITPNGFAVSIAFNKGNYQLIPKEDL
Ga0209709_100178809	F001048	GAGG	MKIVSTKQFWWRLNYLKRNGGEITVTDRTSEMDVKDYNRIELLVNKRVRWELGSEDYMKWDSCGVKDIPTLARAYGIK