Scaffold Ga0209709_10014630

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10014630
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5412
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F020257	Metagenome	225	Y
F046009	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100146301	F020257	N/A	PMPVGIKPEDLNPPHYGIHYYNPEDRRRATDWYYYATSATDYEKAKAEKYVMSYWKPDCGYVCWVGEGYKIKEIDYGVIPIGDIRPPSGAYALQEALKGGHDRVEVIGFDSIAGEFSVSLSNDRPEFELPSFPILEERMRKWLKYYRTVTEHYNEIEIIWHKQ
Ga0209709_100146305	F005103	N/A	MEMKEENNKIQIFINKKEMPYSHQNMIRAINSFFPYLTNDDLNEMSEYISTLKDHRREKEAESKLEVEKHSWPYPDTKKQI
Ga0209709_100146308	F046009	AGGA	MTTLKVIPEEKPDINKVATCSLLDKSALSRNVFTKEECKRIIEIGRSWELVDAQIQTKSPEAESEKNDDYRNCKMYGPPVDE