 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10013986 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5575 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (95.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005591 | Metagenome / Metatranscriptome | 395 | Y |
| F015812 | Metagenome / Metatranscriptome | 252 | Y |
| F031261 | Metagenome | 183 | Y |
| F051470 | Metagenome | 144 | N |
| F068823 | Metagenome | 124 | N |
| F077786 | Metagenome | 117 | Y |
| F102056 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1001398610 | F077786 | AGGAGG | MNKETYTYEVSEQSTDTRYFEIMSNRKLTEEEIHNAICMPDIQKEWDCVKEGGITATFKWTDFGEDSDMEIDSGEVSDE |
| Ga0209709_1001398611 | F102056 | GGAG | MNKEFEKELVELLNKYYNTNWDYVWEFIGDTIETNLWLGEEVSDDV |
| Ga0209709_1001398616 | F015812 | GAGG | MSKTLYKRIDEICAREYVVNKLSVNKYRTFVDLLYDDLISWDNPLDVSEIDIIHRIHEHLSVMVSSSLVYPPIGTNHT |
| Ga0209709_1001398620 | F005591 | GGAGG | MNLYFTSTTLDKEIEWTWTDMDKAYWNTWTPKKSDIKIVTRLNKEQKNQALDELWEDLQSSIQFTKDRNNARRREKRVASKK |
| Ga0209709_100139867 | F051470 | AGGAG | MSNDNKWIHEYYDERWEHYFETLRKDIKDIGQVEAMADRMAMEDVYNLDMEG |
| Ga0209709_100139868 | F068823 | GGAGG | MSRTYNTYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLETIKYLVCSKTNRKFDWFNDEMMTDIISDIEEGVSYEN |
| Ga0209709_100139869 | F031261 | AGGAG | MRTKTYVMTVEKNSDEVLEQLNKLQQVKQSVSLMNRHSNRKHYVKCQGRWGRNNPNYFKGGCSGHSFCSLQNAVRWDVYIYQGGE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |