Scaffold Ga0209709_10013256

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10013256
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5754
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014448	Metagenome	263	Y
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F067117	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1001325612	F067117	N/A	MNTKVKEKMKMLQIPVTEKQFDTLKDKADKEKRSLPNSILIILEPHMKVK
Ga0209709_1001325618	F014448	AGGAG	MAKAKNINIYKIFSDTYKKRKMFSFMGFGELKLIPKVTKPIRQTTSKILMGNHVDKFIKERQLTLVVNNGN
Ga0209709_100132566	F028622	N/A	MKSKRTYESKKEHGEDISHENERKHRNESIKDDRGSLDLTFQIDILNKKVKNLDGLEKIHKETNGDLRIHILKQEKEIYQLKKDMAFQKETNEMDIMQKDNEIGRLMKKITEK
Ga0209709_100132567	F020603	GGAGG	MRILLLLTFILLANCSSYKPLINPETSKDKYSGNVIAGNYWKDLQACNYIFKENTGKLAILPDKRGFITKCMNDYGYSILR