NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10011987

Scaffold Ga0209709_10011987


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10011987 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6137
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004881Metagenome / Metatranscriptome420Y
F022672Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100119877F022672N/AMTIENRDYGGWVTEELQSLLDAHIFNRDHFAETFTDRADLNKEIQLINNEIRKRKKSE
Ga0209709_100119879F004881GAGGMSDQYKECSNPNDPEDKSLCIIIQDDSPFDGAVIRYTTFKLVEQELTGDDIACQYEYEIEVPPHDLGIEISDKDGKAFEQRLGEWVIEIIQSQMDKHAAADRSNNTKKSTT

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